Emeritus Honorary Researcher
PhD DSc FRCPI FAA
Prof Holt established the Division of Cell Biology at the Institute's inception in 1990, with his research group's main focus being on the functioning of the paediatric immune system and its role in inflammatory diseases in there lung and airways.
His group’s major discoveries include ELISPOT technology for quantitation of antibody and cytokine secreting cells, the role of Alveolar Macrophages in controlling the intensity of T-cell responses in the lung, the phenomenon of immune tolerance induction to inhaled non-pathogenic proteins (such as pollens) which normally protects against respiratory allergy, the Dendritic Cell network throughout lung and airway tissues and its role in regulation of local immune surveillance, and the primary role of developmental defects in immune function(s) in genetic susceptibility to early onset allergy and asthma in childhood.
He and his colleagues continue to pursue basic research on the immunological mechanisms that underpin these processes, in conjunction with translational studies utilizing these findings to develop and trial new immunotherapeutic approaches for primary and secondary prevention of asthma in children. These studies involve a network of clinical and scientific collaborators in Australia, Europe and the US.
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Projects
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Publications
December 2015
Environmental microbial exposure and protection against asthma
This article looks at the clinical implications of the research into microbial exposure & protection against asthma.
Asthma Published research Human ImmunologyJanuary 2015Meta-analysis identifies seven susceptibility loci involved in the atopic march
Eczema often precedes the development of asthma in a disease course called the 'atopic march'.
Asthma Published research Human ImmunologyMay 2015The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development
Lung inflammation resulting from ARIs during infancy is linked to asthma development.
Asthma Published research Allergy & Infectious Diseases Human ImmunologyMay 2015The mechanism or mechanisms driving atopic asthma initiation: The infant respiratory microbiome moves to center stage
Although debate surrounding the mechanism or mechanisms governing this causal pathway remains intense, demonstration of the capacity of pretreatment...
Asthma Published research Infectious Diseases Human ImmunologyApril 2015Relationship between cytokine expression patterns and clinical outcomes: two population-based birth cohorts
Our findings suggest that positive HDM 'allergy tests' and asthma are associated with a broad range of immunophenotypes, which may have important...
Asthma Published research Human ImmunologyApril 2015Phenotypic, functional, and plasticity features of classical and alternatively activated human macrophages
Human peripheral blood monocytes were differentiated into uncommitted macrophages (M0) and then polarized to M1 and M2 phenotypes using LPS/IFN-gamma...
Published research Human ImmunologyMarch 2015Environmental Factors in Children's Asthma and Respiratory Effects
Asthma is more common in childhood than in adulthood and is more correctly thought of as a syndrome than as a discrete condition.
Asthma Published research Human ImmunologyFebruary 2015Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children
Food allergy (FA) affects 2%-10% of US children and is a growing clinical and public health problem.
Published research Human Immunology Food AllergyMarch 2023Maternal diet modulates the infant microbiome and intestinal Flt3L necessary for dendritic cell development and immunity to respiratory infection
Poor maternal diet during pregnancy is a risk factor for severe lower respiratory infections in the offspring, but the underlying mechanisms remain elusive. Here, we demonstrate that in mice a maternal low-fiber diet led to enhanced LRI severity in infants because of delayed plasmacytoid dendritic cell recruitment and perturbation of regulatory T cell expansion in the lungs.
Asthma Published research Human Immunology Respiratory viral infectionsDecember 2014Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype
Previous analyses of family data from the Tasmanian Longitudinal Health Study provide evidence that this phenotype has a stronger genetic cause than asthma...
Asthma Published research Human ImmunologyNovember 2014Persistent and compartmentalised disruption of dendritic cell subpopulations in the lung following influenza A virus infection
Immunological homeostasis in the respiratory tract is thought to require balanced interactions between networks of dendritic cell (DC) subsets in lung...
Published research Influenza Pregnancy and Early Life Immunology Human Immunology Respiratory Environmental HealthOctober 2014Anti-infective proteins in breast milk and asthma-associated phenotypes during early childhood
The impact of breast milk feeding on susceptibility to asthma in childhood is highly controversial, due in part to failure of the majority of studies in the...
Published research Breastfeeding Human ImmunologySeptember 2014Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study
This genome-wide association study (GWAS) utilises data from the Western Australian Pregnancy Cohort (Raine) Study for 25-hydroxyvitamin D (25(OH)D) levels...
Published research Academic Biostatistics Vitamin D and Sunlight Inflammation Human Immunology Genetics and HealthSeptember 2014Elucidation of pathways driving asthma pathogenesis: Development of a systems-level analytic strategy
Whereas asthma was rare in the late 1800s and early 1900s, the marked increase in its incidence and prevalence since the 1960s points to substantial gene ×...
Asthma Published research Human ImmunologyAugust 2014Vitamin D status and predictors of serum 25-hydroxyvitamin D concentrations in Western Australian adolescents
Using prospective data from the Western Australian Pregnancy Cohort (Raine) Study, we investigated vitamin D status and predictors of serum 25-hydroxyvitamin...
Published research Academic Biostatistics Vitamin D and Sunlight Inflammation Human Immunology Youth HealthAugust 2014Global allergy forum and second davos declaration 2013 allergy: Barriers to cure - Challenges and actions to be taken
The epidemic increase in the prevalence of allergic disease, which first started in the industrialized countries in the 1960s, may have reached a peak in the...
Asthma Published research Human ImmunologyJuly 2014Prenatal adverse life events increase the risk for atopic diseases in children, which is enhanced in the absence of a maternal atopic predisposition
There is evidence to suggest an association between prenatal maternal stress and the development of asthma or other atopic diseases in offspring.
Asthma Published research Human ImmunologyMay 2014Low serum 25-hydroxyvitamin D concentrations associate with non-alcoholic fatty liver disease in adolescents independent of adiposity
This paper examined the link between low serum Vitamin D levels and development of non-alcoholic fatty liver disease (NAFLD) in adolescents between 14 and 17...
Published research Vitamin D and Sunlight Inflammation Human ImmunologyMay 2014Vitamin D deficiency at 16 to 20 weeks' gestation is associated with impaired lung function and asthma at 6 years of age
This paper examines whether a Vitamin D deficiency during pregnancy affects the child's lung function predisposition towards lung disease such as asthma.
Published research Autism Research Inflammation Human Immunology Children's Lung HealthMay 2014Antibody and cell-mediated immunity to pertussis 4 years after monovalent acellular pertussis vaccine at birth
In the longest reported follow-up of infants who received aP vaccine at birth, we found a trend to lower PT IgG antibodies post booster compared with receipt...
Published research Whooping Cough Human ImmunologyApril 2014Birth cohorts in asthma and allergic diseases: Report of a NIAID/NHLBI/MeDALL joint workshop
Population-based birth cohorts on asthma and allergies increasingly provide new insights into the development and natural history of the diseases.
Asthma Published research Human ImmunologyMarch 2014Low maternal serum vitamin D during pregnancy and the risk for postpartum depression symptoms
Pregnancy is a time of vulnerability for vitamin D insufficiency, and there is an emerging literature associating low levels of 25(OH)-vitamin D with...
Published research Autism Research Inflammation Human Immunology Cardiometabolic SunhealthFebruary 2014Prevention - what is the most promising approach?
This paper is an editorial comment by Professor Patrick Holt on the potential for developing early intervention strategies in children with allergies and asthma
Published research Human ImmunologyFebruary 2014Defective respiratory tract immune surveillance in asthma : A primary causal factor in disease onset and progression
The relative importance of respiratory viral infections vs inhalant allergy in asthma pathogenesis is the subject of ongoing debate.
Asthma Published research Allergy & Infectious Diseases Pregnancy and Early Life Immunology Human ImmunologyAugust 2013Genetic polymorphism of KIR2DL4 (CD158d), a putative NK cell receptor for HLA-G, does not influence susceptibility to asthma
No reproducible associations with KIR2DL4 genotype were identified, leading us to conclude that the KIR2DL4 9A/10A polymorphism has no influence...
Asthma Published research Human ImmunologyAugust 2013Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization
Allergen-specific immunoglobulin E (present in allergic sensitization) has a central role in the pathogenesis of allergic disease.
Published research Human ImmunologyJuly 2013Size-Dependent Uptake of Particles by Pulmonary Antigen-Presenting Cell Populations
The respiratory tract is an attractive target organ for novel diagnostic and therapeutic applications with nano-sized carriers, but their immune effects and...
Published research Pregnancy and Early Life Immunology Human ImmunologyJune 2013Prophylactic use of sublingual allergen immunotherapy in high-risk children: A pilot study
These findings suggest that this modified version of SLIT should be considered for retesting of mucosal-based immunotherapy for atopic asthma prevention.
Asthma Published research Human ImmunologyFebruary 2013Persistent Effects of Maternal Smoking during Pregnancy on Lung Function and Asthma in Adolescents
The extent to which maternal smoking in pregnancy (MSP) has persisting effects on respiratory health remains uncertain and the mechanisms involved are not...
Asthma Published research Academic Biostatistics Human ImmunologyJanuary 2013Maternal Vitamin D Levels and the Autism Phenotype Among Offspring
We tested whether maternal vitamin D insufficiency during pregnancy is related to the autism phenotype.
Autism Spectrum Disorders Published research Vitamin D and Sunlight Autism Research Inflammation Human ImmunologyJanuary 2013Safety and Immunogenicity of Neonatal Pneumococcal Conjugate Vaccination in Papua New Guinean Children: A Randomised Controlled Trial
We conducted an open randomized controlled trial in Papua New Guinea to compare safety, immunogenicity and priming for memory of 7-valent PCV (PCV7) given in...
Published research Immunisation Infectious Diseases Human Immunology Ear Health Vaccine Trials GroupDecember 2012Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis
Atopic dermatitis (AD) is a commonly occurring chronic skin disease with high heritability. Apart from filaggrin (FLG), the genes influencing atopic...
Published research Human ImmunologyNovember 2012Neonatal antigen-presenting cells are functionally more quiescent in children born under traditional compared with modern environmental conditions
One explanation for the high burden of allergic and autoimmune diseases in industrialized countries is inappropriate immune development under modern...
Published research Pregnancy and Early Life Immunology Human Immunology Vaccine Trials Group ORIGINSMay 2012Ontogeny of toll-like and NOD-like receptor-mediated innate immune responses in Papua New Guinean infants
Studies addressing the ontogeny of the innate immune system in early life have reported mainly on Toll-like receptor (TLR) responses in infants living in...
Published research Child Allergy & Immunology Human Immunology ORIGINSMay 2012Viral infections and atopy in asthma pathogenesis: New rationales for asthma prevention and treatment
Prospective birth cohort studies tracking asthma initiation and consolidation in community cohorts have identified viral infections occurring against a...
Asthma Published research Human ImmunologyMay 2012Hospitalisation for bronchiolitis in infants is more common after elective caesarean delivery
The authors previously reported an increased risk of hospitalisation for acute lower respiratory infection up to age 2 years in children delivered by...
Published research Academic Biostatistics Infectious Diseases Human Immunology Ear Health Infectious Diseases Epidemiology Vaccine Trials GroupMay 2012Defective aeroallergen surveillance by airway mucosal dendritic cells as a determinant of risk
A hallmark of atopic asthma is development of chronic airways hyper-responsiveness (AHR) that persists in the face of ongoing exposure to perennial...
Asthma Published research Pregnancy and Early Life Immunology Human Immunology Respiratory Environmental HealthApril 2012Virus infection and allergy in the development of asthma: What is the connection?
Information is accumulating which implicates airway inflammation resulting from respiratory viral infections, acting against a background of atopy.
Asthma Published research Infectious Diseases Pregnancy and Early Life Immunology Human ImmunologyApril 2012Antibacterial antibody responses associated with the development of asthma in house dust mite-sensitised and non-sensitised children
We aimed to measure the antibody development to 2 bacteria in a birth cohort at high risk of allergic disease, and to assess which responses are asthma-linked.
Asthma Published research Allergy & Infectious Diseases Human ImmunologyApril 2012Febrile respiratory illnesses in infancy and atopy are risk factors for persistent asthma and wheeze
The aim of this study was to explore associations between severe respiratory infections and atopy in early childhood with persisting wheeze and asthma.
Asthma Published research Infectious Diseases Human ImmunologyMarch 2012Comparison of neonatal T regulatory cell function in Papua New Guinean and Australian newborns
We compared neonatal T reg from children born in western conditions (Australia) with those of neonates born in high microbial conditions (Papua New Guinea)...
Published research Child Allergy & Immunology Human Immunology ORIGINSMarch 2012Maternal serum vitamin D levels during pregnancy and offspring neurocognitive development
The objective was to determine the association between maternal serum 25(OH)-vitamin D concentrations and behavioural, emotional and language outcomes...
Published research Language Development Vitamin D and Sunlight Autism Research Inflammation Human ImmunologyMarch 2012Effect of early carriage of streptococcus pneumoniae on the development of pneumococcal protein-specific cellular immune responses in infancy
The aim of this study was to examine the relationship between nasopharyngeal pneumococcal colonization in early life and the development of T cell responses.
Published research Academic Biostatistics Infectious Diseases Allergy & Infectious Diseases Human Immunology Vaccine Trials GroupMarch 2012A novel role for interleukin-1 receptor signaling in the developmental regulation of immune responses to endotoxin
Suggests that IL-1R1 expression provides an additional level of Myd88-dependent signaling during this period of heighted susceptibility to infection.
Published research Child Allergy & Immunology Human Immunology ORIGINSFebruary 2012A genomics-based approach to assessment of vaccine safety and immunogenicity in children
This methodology has significant potential to identify covert interactions between inflammatory pathways triggered by vaccination, and as such may be a...
Published research Immunisation Human Immunology Systems Immunology Vaccine Trials GroupFebruary 2012Maternal Serum Vitamin D Levels During Pregnancy and Offspring Neurocognitive Development
New research links poor language to lack of Vitamin D in womb.
Published research Language Development Vitamin D and Sunlight Autism Research Inflammation Human ImmunologyFebruary 2012T-cell activation genes differentially expressed at birth in CD4+ T-cells from children who develop IgE food allergy
To show underlying mechanisms, we examined differences in T-cell gene expression in samples at birth and at 1 year in children with and without IgE allergy.
Published research Child Allergy & Immunology Human Immunology Systems Immunology ORIGINS Food AllergyJanuary 2012Sensitizing and Th2 Adjuvant Activity of Cysteine Protease Allergens
Here, we report on a model that does not use Th2-skewing adjuvants and yet achieves sensitization solely via the nasal mucosa.
Asthma Published research Child Allergy & Immunology Human Immunology Respiratory Environmental HealthJanuary 2012Airway Epithelial Cells Condition Dendritic Cells to Express Multiple Immune Surveillance Genes
AEC-conditioned DC showed selective upregulation of chemokines that recruit Th1 cells, but minimal change in chemokines linked to Th2 cell recruitment.
Published research Human Immunology Systems ImmunologyOctober 2011Hospitalisation for bronchiolitis in infants is more common after elective caesarean delivery
The authors previously reported an increased risk of hospitalisation for acute lower respiratory infection up to age 2 years in children delivered by...
Published research Academic Biostatistics Bronchiolitis Human Immunology Ear Health Infectious Diseases Epidemiology Vaccine Trials GroupSeptember 2011T regulatory cells in childhood asthma
Asthma is a chronic disease of the airways, most commonly driven by immuno-inflammatory responses to ubiquitous airborne antigens.
Asthma Published research Pregnancy and Early Life Immunology Human ImmunologyAugust 2011Restricted aeroallergen access to airway mucosal dendritic cells in vivo limits allergen-specific
Chronic innocuous aeroallergen exposure attenuates CD4+ T cell-mediated airways hyperresponsiveness in mice; however, the mechanism(s) remain unclear
Asthma Published research Pregnancy and Early Life Immunology Human ImmunologyAugust 2011Risk factors for bronchial hyperresponsiveness in teenagers differ with sex and atopic status
Sex-related differences in bronchial hyperresponsiveness (BHR) have been reported in adolescents, but the mechanisms remain obscure.
Asthma Published research Human ImmunologyJuly 2011Pneumococcal conjugate vaccination at birth in a high-risk setting: No evidence for neonatal T-cell tolerance
Concerns about the risk of inducing immune deviation-associated "neonatal tolerance" as described in mice have restricted the widespread adoption...
Published research Immunisation Human Immunology Systems Immunology Ear Health Vaccine Trials GroupJuly 2011Gene-vitamin D interactions on food sensitization: A prospective birth cohort study
It has been hypothesized that vitamin D deficiency (VDD) contributes to the development of food sensitization (FS) and then food allergy.
Published research Vitamin D and Sunlight Human Immunology Food AllergyJune 2011Gene polymorphisms, breast-feeding, and development of food sensitization in early childhood
The effect of breast-feeding on the development of allergic disease is uncertain
Published research Breastfeeding Human Immunology Food AllergyMay 2011Interaction between adaptive and innate immune pathways in the pathogenesis of atopic asthma: Operation of a lung/bone marrow axis
Atopic asthma is the most common form of asthma, particularly during childhood, and in many cases it persists into adult life.
Asthma Published research Human ImmunologyMay 2011Vitamin D and atopy and asthma phenotypes in children: a longitudinal cohort study
Vitamin D has been linked in some studies with atopy- and asthma-associated phenotypes in children with established disease,but its role in disease inception...
Asthma Published research Academic Biostatistics Vitamin D and Sunlight Inflammation P4 Respiratory Health for KidsMarch 2011Regulatory role of IL10 genetic variations in determining allergen-induced TH2 cytokine responses in children
Interleukin-10 is a key immunomodulatory cytokine the principal function of which is to limit the magnitude of immune response.
Asthma Published research Human ImmunologyMarch 2011Infection and the development of allergic disease
An improved understanding of the roles of protein kinases in intracellular signalling and disease progression has driven significant advances in protein...
Asthma Published research Human ImmunologyJanuary 2011Boosting airway T-regulatory cells by gastrointestinal stimulation as a strategy for asthma control
The hallmark of atopic asthma is transient airways hyperresponsiveness (AHR) preceded by aeroallergen-induced Th-cell activation.
Asthma Published research Pregnancy and Early Life Immunology Human Immunology Respiratory Environmental HealthJanuary 2011Environmental Factors in Children's Asthma and Respiratory Effects
Childhood asthma is a condition characterized by airflow obstruction that varies in time spontaneously, in response to various environmental stimuli...
Asthma Published research Human ImmunologyJanuary 2011Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function
Pulmonary function measures reflect respiratory health and are used in the diagnosis of chronic obstructive pulmonary disease.
Asthma Published research Human ImmunologyDecember 2010Epithelial-dendritic cell interactions in allergic disorders
Airway epithelial cells act through multiple mechanisms to function as an important component of the pulmonary defence strategy that is crucial...
Published research Pregnancy and Early Life Immunology Human ImmunologyNovember 2010Does genetic regulation of IgE begin in utero?
Elucidation of early life factors is critical to understand the development of allergic diseases, especially those manifesting in early life such as food allerg
Asthma Published research Human Immunology Food AllergyNovember 2010The hygiene hypothesis revisited: role of materno-fetal interactions
For 20 years, the hygiene hypothesis has dominated attempts to explain the increasing prevalence of allergic disease. A causal link between maternal innate immu
Asthma Published research Human ImmunologySeptember 2010Th2-associated immunity to bacteria in asthma in teenagers and susceptibility to asthma
Bacterial colonisation of the airways is associated with increased risk of childhood asthma
Asthma Published research Academic Biostatistics Allergy & Infectious Diseases Human Immunology Youth HealthAugust 2010Lung homing T-cell generation is dependent on strength and timing of antigen delivery to lymph nodes
Inhaled allergens are known for their immediate and ongoing effects in the respiratory tract (RT).
Published research Human ImmunologyJune 2010Do early-life viral infections cause asthma?
Epidemiologic associations between viral lower respiratory infections (LRIs) and asthma in later childhood are well known
Asthma Published research Infectious Diseases Human ImmunologyMay 2010Interactions between innate and adaptive immunity in asthma pathogenesis: new perspectives from studies on acute exacerbations
Atopic asthma, which is at its highest prevalence during childhood/young adulthood, represents the main focus of this review.
Asthma Published research Pregnancy and Early Life Immunology Human ImmunologyApril 2010Dahlem Conference
There is increasing evidence that the functional state of the immune system at birth is predictive of the kinetics of immune maturation in early infancy.
Published research Infectious Diseases Human ImmunologyMarch 2010Toward improved prediction of risk for atopy and asthma among preschoolers: A prospective cohort study
Atopy and asthma are commonly initiated during early life, and there is increasing interest in the development of preventive treatments for at-risk children.
Asthma Published research Human Immunology Systems ImmunologyMarch 2010Th2-polarisation of cellular immune memory to neonatal pertussis vaccination
Current infant vaccination against pertussis in North America and Australia requires three doses of vaccines including diphtheria, tetanus and acellular...
Published research Immunisation Human Immunology Vaccine Trials GroupJanuary 2010Early aberrant antibody responses of aeroallergen sensitised people to subclinical bacterial infection
Early aberrant antibody responses, aeroallergen sensitised people, subclinical bacterial infection
Published research Allergy & Infectious Diseases Human ImmunologyJanuary 2010The developing immune system and allergy
The developing immune system and allergy
Published research Human ImmunologyJanuary 2010Early immunological influences on asthma development: opportunities for early intervention
Early immunological influences on asthma development: opportunities for early intervention
Asthma Published research Human ImmunologyJanuary 2010Toll-like receptor 7 function is reduced in adolescents with asthma
Anti-viral innate immune responses may be impaired in asthma, although the mechanisms are not well understood.
Asthma Published research Human ImmunologyJanuary 2010Identification and Isolation of Rodent Respiratory Tract Dendritic Cells
This chapter describes the preparation of respiratory tract tissue from both mice and rats for the isolation of respiratory tract dendritic cells (RTDC).
Published research Pregnancy and Early Life Immunology Human ImmunologyFebruary 2007Assessment of the potency and potential immunomodulatory effects of the Measles Mumps Rubella-Varicella vaccine in infants
This study compared the potency and immunomodulatory effects of measles mumps rubella (MMR) vaccine given to infants alone or in combination with varicella...
Published research Immunisation Infectious Diseases Human Immunology Vaccine Trials GroupAugust 2022Lipopolysaccharide-induced interferon response networks at birth are predictive of severe viral lower respiratory infections in the first year of life
Appropriate innate immune function is essential to limit pathogenesis and severity of severe lower respiratory infections (sLRI) during infancy, a leading cause of hospitalization and risk factor for subsequent asthma in this age group.
Published research Early Childhood Development Pregnancy and Early Life Immunology Human Immunology P4 Respiratory Health for Kids Respiratory viral infectionsJuly 2022Protection against severe infant lower respiratory tract infections by immune training: Mechanistic studies
Results from recent clinical studies suggest potential efficacy of immune training (IT)-based approaches for protection against severe lower respiratory tract infections in infants, but underlying mechanisms are unclear.
Published research Pregnancy and Early Life Immunology Human Immunology Systems Immunology Immune system Respiratory viral infections Cancer Immunology and BiologyJuly 2022Asthma and allergies in a cohort of adolescents conceived with ART
Research question: Are asthma and allergies more common in adolescents conceived with assisted reproductive technologies (ART) compared with adolescents conceived without?
Asthma Published research Human Immunology Assisted Reproductive Technologies Children's Lung Health AllergyMay 2022Remission of peanut allergy is associated with rewiring of allergen-driven T helper 2-related gene networks
The immunological changes underpinning acquisition of remission (also called sustained unresponsiveness) following food immunotherapy remain poorly defined. Limited access to effective therapies and biosamples from treatment responders has prevented progress. Probiotic peanut oral immunotherapy is highly effective at inducing remission, providing an opportunity to investigate immune changes.
Published research Human Immunology Systems Immunology Food Allergy Computational Biology Allergy Cancer Immunology and BiologyMarch 2021The intersect of genetics, environment, and microbiota in asthma-perspectives and challenges
In asthma, a significant portion of the interaction between genetics and environment occurs through microbiota. The proposed mechanisms behind this interaction are complex and at times contradictory. This review covers recent developments in our understanding of this interaction: the "microbial hypothesis" and the "farm effect"; the role of endotoxin and genetic variation in pattern recognition systems; the interaction with allergen exposure; the additional involvement of host gut and airway microbiota; the role of viral respiratory infections in interaction with the 17q21 and CDHR3 genetic loci; and the importance of in utero and early-life timing of exposures.
Asthma Published research Human ImmunologyJanuary 2021Time spent outdoors through childhood and adolescence - assessed by 25-hydroxyvitamin D concentration - and risk of myopia at 20 years
To investigate the relationship between time spent outdoors, at particular ages in childhood and adolescence, and myopia status in young adulthood using serum 25-hydroxyvitamin D [25(OH)D] concentration as a biomarker of time spent outdoors. Participants of the Raine Study Generation 2 cohort had 25(OH)D concentrations measured at the 6-, 14-, 17- and 20-year follow-ups. Participants underwent cycloplegic autorefraction at age 20 years, and myopia was defined as a mean spherical equivalent -0.50 dioptres or more myopic. Logistic regression was used to analyse the association between risk of myopia at age 20 years and age-specific 25(OH)D concentrations. Linear mixed-effects models were used to analyse trajectory of 25(OH)D concentrations from 6 to 20 years.
Published research Vitamin D and Sunlight Human ImmunologyNovember 2021Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4
Previous genome-wide association studies revealed multiple common variants involved in eczema but the role of rare variants remains to be elucidated. Here, we investigate the role of rare variants in eczema susceptibility. We meta-analyze 21 study populations including 20,016 eczema cases and 380,433 controls. Rare variants are imputed with high accuracy using large population-based reference panels.
Published research Human ImmunologySeptember 2021Cord-blood respiratory syncytial virus antibodies and respiratory health in first 5 years of life
To determine the potential longer-term effects of maternal antenatal respiratory syncytial virus (RSV) vaccination, we examined the association between cord-blood RSV-neutralizing antibodies (RSV-NA) and RSV infections in the first 2 years of life, RSV-NA at 3 years, and respiratory health to age 5 years.
Asthma Published research Human Immunology Respiratory viral infectionsSeptember 2021Whole-cell pertussis vaccine in early infancy for the prevention of allergy in children
Atopic diseases are the most common chronic conditions of childhood. The apparent rise in food anaphylaxis in young children over the past three decades is of particular concern, owing to the lack of proven prevention strategies other than the timely introduction of peanut and egg.
Published research Early Childhood Development Immunisation Human Immunology Ear Health Infectious Disease Implementation Research Vaccine Trials Group Subsite: Wesfarmers Centre of Vaccines and Infectious Diseases Allergy Immune systemSeptember 2021Whole‐cell pertussis vaccine in early infancy for the prevention of allergy in children
Atopic diseases are the most common chronic conditions of childhood. The apparent rise in food anaphylaxis in young children over the past three decades is of particular concern, owing to the lack of proven prevention strategies other than the timely introduction of peanut and egg.
Published research Whooping Cough Human Immunology Ear Health Infectious Disease Implementation Research Infectious Diseases Epidemiology Vaccine Trials GroupJuly 2021Protection against neonatal respiratory viral infection via maternal treatment during pregnancy with the benign immune training agent OM-85
Incomplete maturation of immune regulatory functions at birth is antecedent to the heightened risk for severe respiratory infections during infancy. Our forerunner animal model studies demonstrated that maternal treatment with the microbial-derived immune training agent OM-85 during pregnancy promotes accelerated postnatal maturation of mechanisms that regulate inflammatory processes in the offspring airways.
Published research Pregnancy and Early Life Immunology Human ImmunologyJuly 2021Protection against neonatal respiratory viral infection via maternal treatment during pregnancy with the benign immune training agent OM-85
Incomplete maturation of immune regulatory functions at birth is antecedent to the heightened risk for severe respiratory infections during infancy. Our forerunner animal model studies demonstrated that maternal treatment with the microbial-derived immune training agent OM-85 during pregnancy promotes accelerated postnatal maturation of mechanisms that regulate inflammatory processes in the offspring airways.
Published research Early Childhood Development Pregnancy and Early Life Immunology Human Immunology Systems ImmunologyJuly 2021IRF7-Associated Immunophenotypes Have Dichotomous Responses to Virus/Allergen Coexposure and OM-85-Induced Reprogramming
High risk for virus-induced asthma exacerbations in children is associated with an IRF7lo immunophenotype, but the underlying mechanisms are unclear. Here, we applied a Systems Biology approach to an animal model comprising rat strains manifesting high versus low susceptibility to experimental asthma, induced by virus/allergen coexposure, to elucidate the mechanism(s)-of-action of the high-risk asthma immunophenotype.
Asthma Published research Pregnancy and Early Life Immunology Inflammation Human Immunology Systems Immunology Respiratory Environmental HealthApril 2021Enhanced Neutralizing Antibody Responses to Rhinovirus C and Age-Dependent Patterns of Infection
Rhinovirus (RV) C can cause asymptomatic infection and respiratory illnesses ranging from the common cold to severe wheezing. The aim was to identify how age and other individual-level factors are associated with susceptibility to RV-C illnesses. Longitudinal data from the COAST (Childhood Origins of Asthma) birth cohort study were analyzed to determine relationships between age and RV-C infections. Neutralizing antibodies specific for RV-A and RV-C (three types each) were determined using a novel PCR-based assay.
Published research Infectious Diseases Human ImmunologyDecember 2020OPTIMUM study protocol: an adaptive randomised controlled trial of a mixed whole-cell/acellular pertussis vaccine schedule
Combination vaccines containing whole-cell pertussis antigens were phased out from the Australian national immunisation programme between 1997 and 1999 and replaced by the less reactogenic acellular pertussis (aP) antigens. In a large case-control study of Australian children born during the transition period, those with allergist diagnosed IgE-mediated food allergy were less likely to have received whole-cell vaccine in early infancy than matched population controls (OR: 0.77 (95% CI, 0.62 to 0.95)). We hypothesise that a single dose of whole-cell vaccine in early infancy is protective against IgE-mediated food allergy.
Published research Human Immunology Vaccine Trials Group Subsite: Wesfarmers Centre of Vaccines and Infectious DiseasesDecember 2020Transplacental Innate Immune Training via Maternal Microbial Exposure: Role of XBP1-ERN1 Axis in Dendritic Cell Precursor Programming
We recently reported that offspring of mice treated during pregnancy with the microbial-derived immunomodulator OM-85 manifest striking resistance to allergic airways inflammation, and localized the potential treatment target to fetal conventional dendritic cell (cDC) progenitors. Here, we profile maternal OM-85 treatment-associated transcriptomic signatures in fetal bone marrow, and identify a series of immunometabolic pathways which provide essential metabolites for accelerated myelopoiesis.
Published research Pregnancy and Early Life Immunology Human Immunology Systems ImmunologyJuly 2020Whole-cell pertussis vaccine in early infancy for the prevention of allergy
This is a protocol for a Cochrane Review (intervention). The objectives were to assess the efficacy and safety of whole‐cell pertussis (wP) vaccinations in comparison to acellular pertussis (aP) vaccinations in early infancy for the prevention of atopic diseases in children.
Asthma Published research Whooping Cough Infectious Diseases Human Immunology Ear Health Vaccine Trials Group Subsite: Wesfarmers Centre of Vaccines and Infectious DiseasesJune 2020Whole-Cell Pertussis Vaccination and Decreased Risk of IgE-Mediated Food Allergy: A Nested Case-Control Study
Australian infants who received whole-cell pertussis vaccines were less likely to be diagnosed with food allergy in childhood
Published research Immunisation Human Immunology Infectious Disease Implementation Research Vaccine Trials Group Food AllergyJune 2020Interaction between filaggrin mutations and neonatal cat exposure in atopic dermatitis
Recent birth cohort studies showed a significant interaction between cat ownership at birth and mutations in FLG on the development of early‐onset atopic dermatitis
Published research Human ImmunologyMay 2020Immune function during early adolescence positively predicts adult facial sexual dimorphism in both men and women
Our results support a fundamental assumption that facial sexual dimorphism is an indicator of immune function during the development of facial sexual dimorphism
Published research Human ImmunologyMarch 2020Oestrogen amplifies pre-existing atopy-associated Th2 bias in an experimental asthma model
The role of oestrogen in experimental atopic asthma, and guide future research on sex-related variations in atopic asthma susceptibility/intensity
Published research Pregnancy and Early Life Immunology Human ImmunologyFebruary 2020A method for the generation of large numbers of dendritic cells from CD34+ hematopoietic stem cells from cord blood
Neonatal dendritic cells generated form CD34+ cord blood progenitors have a higher inflammatory potential when exposed to viral than bacterial related stimuli
Published research Pregnancy and Early Life Immunology Human ImmunologyJanuary 2020Systems biology and big data in asthma and allergy: recent discoveries and emerging challenges
We describe recent "omic"-level findings, and examine how these findings have been systematically integrated to generate further insight
Asthma Published research Human ImmunologyMarch 2019Developmental regulation of type 1 and type 3 interferon production and risk for infant infections and asthma development
Type 1 and 3 interferon response capacity appears strongly developmentally constrained at birth
Asthma Published research Academic Biostatistics Human ImmunologyMarch 2019Quantification of Serum Ovalbumin-specific Immunoglobulin E Titre via in vivo Passive Cutaneous Anaphylaxis Assay
We describe herein a highly reproducible in vivo passive cutaneous anaphylaxis assay using Sprague Dawley rats for the quantification of ovalbumin-specific IgE
Published research Pregnancy and Early Life Immunology Human ImmunologyMarch 2019Early Life Ovalbumin Sensitization and Aerosol Challenge for the Induction of Allergic Airway Inflammation in a BALB/c Murine Model
This protocol adapted an experimental animal model of disease for sensitization to ovalbumin during the immediate post-weaning period beginning at 21 days of age
Published research Pregnancy and Early Life Immunology Human ImmunologyNovember 2019Immunoinflammatory responses to febrile lower respiratory infections in infants display uniquely complex/intense transcriptomic profiles
the association between infant LRTI and risk for persistent wheeze/asthma in this cohort is generally stronger for fLRTIs than for other infection categories
Published research Pregnancy and Early Life Immunology Human Immunology Systems ImmunologySeptember 2019Progressive increase of FcεRI expression across several PBMC subsets is associated with atopy and atopic asthma within school-aged children
The expression pattern of FcεRI on DC and basophils differentiates asthmatic from non-asthmatic atopic children
Asthma Published research Academic Biostatistics Pregnancy and Early Life Immunology Human Immunology Systems ImmunologySeptember 2019Primary prevention of severe lower respiratory illnesses in at-risk infants using the immunomodulator OM-85
The effects of OM-85 were strongest in the first winter season, with a trend for fewer children in the OM-85 group to have sLRIs and URIs
Published research Human ImmunologyJune 2019Risk factors and prognosis of recurrent wheezing in Chinese young children: A prospective cohort study
We aimed to investigate the risk factors for different wheezing phenotypes in Chinese young children and to explore the prognosis of recurrent wheezing
Published research Human ImmunologyJune 2019Personalized transcriptomics reveals heterogeneous immunophenotypes in children with viral bronchiolitis
Dysregulated expression of IFN-dependent pathways after respiratory viral infections is a defining immunophenotypic feature of AVB-susceptible infants
Published research Bronchiolitis Pregnancy and Early Life Immunology Human Immunology Systems ImmunologyMay 2019Pregnancy Induces a Steady-State Shift in Alveolar Macrophage M1/M2 Phenotype That Is Associated With a Heightened Severity of Influenza Virus Infection
Pregnancy is associated with an alternatively activated phenotype of alveolar macrophage before infection
Published research Pregnancy and Early Life Immunology Human ImmunologyDecember 2018A marked shift in innate and adaptive immune response in chinese immigrants living in a western environment
There is a marked shift in innate and adaptive immune responses in Chinese immigrants after living in a Western environment for several years
Published research Allergy & Infectious Diseases Human ImmunologyNovember 2018Transplacental immune modulation with a bacterial-derived agent protects against allergic airway inflammation
These data provide proof of concept supporting the rationale for developing transplacental immune reprogramming approaches for primary disease prevention
Published research Pregnancy and Early Life Immunology Human Immunology Respiratory Environmental HealthNovember 2018Basophil counts in PBMC populations during childhood acute wheeze/asthma are associated with future exacerbations
Our findings suggest that the proportion of degranulated basophils can also be associated with recurrent exacerbations
Asthma Published research Pregnancy and Early Life Immunology Human Immunology Systems ImmunologyOctober 2018Trajectories of childhood immune development and respiratory health relevant to asthma and allergy
Our findings demonstrate the utility of unsupervised analysis in elucidating heterogeneity in asthma pathogenesis
Published research Human ImmunologySeptember 2018Airway Microbiota Dynamics Uncover a Critical Window for Interplay of Pathogenic Bacteria and Allergy in Childhood Respiratory Disease
To complement early allergic sensitization, monitoring NPM composition may enable early detection and intervention in high-risk children
Asthma Published research Human Immunology Systems ImmunologyAugust 2018Atopy-dependent and independent immune responses in the heightened severity of atopics to respiratory viral infections: Rat model studies
The co-exposure responses in the Th2high BN incorporated type I interferon/Th1, alternative macrophage activation/Th2 and Th17 signatures
Published research Pregnancy and Early Life Immunology Human Immunology Systems ImmunologyAugust 2018Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis
GWAS analyses of allergic sensitization against inhalant allergens and nonallergic rhinitis suggested shared genetic mechanisms across rhinitis-related traits
Published research Human ImmunologyMarch 2018Functional differences in airway dendritic cells determine susceptibility to IgE-sensitization
Respiratory IgE-sensitization to innocuous antigens increases the risk for developing diseases such as allergic asthma.
Published research Pregnancy and Early Life Immunology Human ImmunologyFebruary 2018Streptococcus pneumoniae colonization of the nasopharynx is associated with increased severity during respiratory syncytial virus infection in young children.
The present study aimed to clarify the effect of viral and bacterial co-detections on disease severity during paediatric ARI.
Published research Human ImmunologyJanuary 2018After asthma: Redefining airways diseases
Identify entrenched areas of asthma management and treatment in which progress has stalled and to challenge current principles
Asthma Published research Human ImmunologyJanuary 2018Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks
We identified new asthma loci, found new associations at loci implicated in the comorbidity of asthma plus hay fever and confirmed nine known loci.
Asthma Published research Human ImmunologyJanuary 2018Persistent activation of interlinked type 2 airway epithelial gene networks in sputum-derived cells from aeroallergen-sensitized symptomatic asthmatics
Our findings provide new insight into the molecular mechanisms operative at baseline in the airway mucosa in atopic asthmatic with natural aeroallergen exposure
Asthma Published research Human Immunology Systems Immunology Airway Epithelial Research Children's Lung Health P4 Respiratory Health for KidsJanuary 2018Asthma is responsible for considerable global morbidity and health-care costs. Substantial progress was made against key outcomes such as hospital admissions with asthma and mortality in the 1990s and early 2000s, but little improvement has been observed
We aim to provide our view of where we are and where we need to go as a community of clinicians and researchers who tackle the public health problem of asthma.
Asthma Published research Human ImmunologyJanuary 2017Childhood atopy and mental health: a prospective, longitudinal investigation
Findings are the first linking atopy (measured by both parent report and objective verification) with increased vulnerability to affective and anxiety problems
Published research Human Capability Human ImmunologyFebruary 2017Vitamin D over the first decade and susceptibility to childhood allergy and asthma
We aimed to research relationships between 25(OH)D levels from birth to 10 y/o and susceptibility to allergic sensitization, respiratory issues and asthma.
Asthma Published research Human ImmunologyFebruary 2017Severe winter asthma exacerbations can be prevented by omalizumab, but there is no carryover effect.
Recurrent severe asthma exacerbations are associated with decreased lung growth or accelerated loss of long function and add substantially to cost and morbidity
Asthma Published research Immunisation Human ImmunologyMarch 2017Identification and characterization of a dendritic cell precursor in parenchymal lung tissue
This is the first study to describe a pulmonary precursor cell for dendritic cells in lung tissue
Published research Human ImmunologyMarch 2017Cord blood Streptococcus pneumoniae-specific cellular immune responses predict early pneumococcal carriage in high-risk infants in Papua New Guinea
We aimed to explore whether newborns in high-risk areas have pre-existing pneumococcal-specific cellular immune responses that effects early acquisition.
Published research Ear Health Vaccine Trials GroupMay 2017Protection against maternal infection-associated fetal growth restriction: Proof-of-concept with a microbial-derived immunomodulator
This study suggests that broad-spectrum protection-of-pregnancy against infection-associated inflammatory stress represents an achievable therapeutic goal
Published research Pregnancy and Early Life Immunology Human Immunology Systems ImmunologyMay 2017Mannitol challenge testing for asthma in a community cohort of young adults
We aimed to quantify the diagnostic utility of mannitol challenge testing for asthma in a community cohort and a symptomatic wheezing subset of this cohort.
Asthma Published research Human Immunology Children's Lung HealthJuly 2017An exposome perspective: Early-life events and immune development in a changing world
Here we review the historical origins of exposome research and define a new concept, the metaexposome
Published research Human ImmunologyJuly 2017CFTR-dependent defect in alternatively-activated macrophages in cystic fibrosis
CFTR-dependent imbalance of macrophage phenotypes and functions could contribute to the exaggerated inflammatory response seen in CF lung disease
Cystic Fibrosis Published research Human Immunology Systems ImmunologyJuly 2017Tracking of Vitamin D status from childhood to early adulthood and its association with peak bone mass
There are moderate associations between vitamin D status measured in prepuberty, adolescence, and early adulthood
Published research Vitamin D and Sunlight Human ImmunologySeptember 2017Streptococcus pneumoniae colonization of the nasopharynx is associated with increased severity during respiratory syncytial virus infection in young children
The present study aimed to clarify the effect of viral and bacterial co-detections on disease severity during paediatric acute respiratory infection (ARI).
Published research Human ImmunologyJuly 2016Transiently increased IgE responses in infants and pre-schoolers receiving only (DTaP) vaccines compared to those initially receiving at least one dose of DTwP vaccine
Confirm the generalised IgE-trophic activity of the DTaP vaccine in pre-schoolers and demonstrate similar (albeit transient) effects in infants
Published research Academic Biostatistics Immunisation Human Immunology Infectious Disease Implementation Research Group A Streptococcal & Rheumatic Heart Disease Vaccine Trials GroupApril 2016Serum 25-hydroxyvitamin D concentrations and cardiometabolic risk factors in adolescents and young adults
Associations between serum 25(OH)D concentrations and cardiometabolic risk factors from adolescence to young adulthood in the Raine Study
Published research Vitamin D and Sunlight Inflammation Human Immunology Youth HealthApril 2016Timing of routine infant vaccinations and risk of food allergy and eczema at one year of age
There was no overall association between delayed DTaP and food allergy; however, children with delayed DTaP had less eczema and less use of eczema medication
Published research Human ImmunologyJanuary 2016Prevention of Allergy/Asthma - New Strategies
This review focuses on the scientific rationale for early intervention aimed at asthma prophylaxis and discusses therapeutic approaches
Asthma Published research Human ImmunologyJanuary 2016Distinguishing benign from pathologic TH2 immunity in atopic children
In addition to its role in blocking TH2 effector activation in the late-phase allergic response, IL-10 is a known IgG1 switch factor
Asthma Published research Allergy & Infectious Diseases Pregnancy and Early Life Immunology Human Immunology Systems ImmunologyJanuary 2016Differential gene network analysis for the identification of asthma-associated therapeutic targets in allergen-specific T-helper memory responses
Differential network analysis of allergen-induced CD4 T cell responses can unmask covert disease-associated genes and pin point novel therapeutic targets
Asthma Published research Human Immunology Systems Immunology -
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